Δημοσιεύσεις

YeSQL: You extend SQL with Rich and Highly Performant User-Defined Functions in Relational Databases. Yannis Foufoulas, Alkis Simitsis, Lefteris Stamatogiannakis, Yannis Ioannidis. PVLDB, 2022

YeSQL: Rich User-Defined Functions without the Overhead. Yannis Foufoulas, Alkis Simitsis, Yannis Ioannidis. PVLDB, 2022

Simplifying p-value calculation for the unbiased microRNAenrichment analysis, using ML-techniques. Konstantinos Zagganas, Maria Lioli, Thanasis Vergoulis, Theodore Dalamagas. EDBT/ICDT Workshops 2021, 2021 

SCHeMa: Scheduling Scientific Containers on a Cluster of Heterogeneous Machines. Thanasis Vergoulis, Konstantinos Zagganas, Loukas Kavouras, Martin Reczko, Stelios Sartzetakis, Theodore Dalamagas. SSDBM 2021: 243-247, 2021 

Assessing Staff's and Stroke Patients' Experiences in 8 Hospitals in Greece: Results from a Prospective Multi-Center Study. Petros Galanis et. al. 20th International Conference on Informatics, Management, and Technology in Healthcare (ICIMTH 2021): 392-396 , 2021 

Patients' Experiences Database After Hospital Discharge: Another Step in Improving Stroke Care. O.Konstantakopoulou et.al. In International Conference on Informatics, Management and Technology in Healthcare (ICIMTH 2020): 2020, 272:441-444,, 2020 

RDF Keyword Search based on Keywords-To-SPARQL Translation. Katerina Gkirtzou, George Papastefanatos, Theodore Dalamagas. 1st International Workshop on Novel Web Search Interfaces and Systems, NWSearch 2015 (with CIKM15), Melbourne, Australia, October 23, 2015. , 2015 

MirPub v2: Towards Ranking and Refining miRNA Publication Search Results. Ilias Kanellos, Vasiliki Vlachokyriakou, Thanasis Vergoulis, Georgios Georgakilas, Yannis Vassiliou, Artemis K. Hatzigeorgiou, Theodore Dalamagas. TPDL 15, 2015 

TarMiner: automatic extraction of miRNA targets from literature. Rodothea-Myrsini Tsoupidi, Ilias Kanellos, Thanasis Vergoulis, Ioannis S Vlachos, Artemis G Hatzigeorgiou, Theodore Dalamagas. SSDBM 2015, article No 12, 2015 

Publishing Diachronic Life Science Linked Data. Katerina Gkirtzou, Thanasis Vergoulis, Artemis Hatzigeorgiou, Timos Sellis, Theodore Dalamagas. SWAT4LS 2014, 2014 

MR-microT: A MapReduce-based MicroRNA Target Prediction Method. Ilias Kanellos, Thanasis Vergoulis, Dimitris Sacharidis, Theodore Dalamagas, Artemis Hatzigeorgiou, Stelios Sartzetakis, Timos Sellis. SSDBM ’14, Article No. 47, 2014 

TARCLOUD: A Cloud-Based Platform to Support miRNA Target Prediction. Thanasis Vergoulis, Michail Alexakis, Theodore Dalamagas, Manolis Maragkakis, Artemis G. Hatzigeorgiou, Timos Sellis. SSDBM 2012: 628-633, 2012

Publishing Life Science Data as Linked Open Data: the Case Study of miRBase. Theodore Dalamagas, Nikos Bikakis, George Papastefanatos, Yannis Stavrakas and Artemis Hatzigeorgiou. International Workshop on Open Data (WOD 2012), Nantes, France, May 25 2012, 2012

New trends in scientific knowledge graphs and research impact assessment. Paolo Manghi, Andrea Mannocci, Francesco Osborne, Dimitris Sacharidis, Angelo A. Salatino, Thanasis Vergoulis. Quant. Sci. Stud. 2(4): 1296-1300, 2021 

BIP4COVID19: Releasing impact measures for articles relevant to COVID-19. Thanasis Vergoulis, Ilias Kanellos, Serafeim Chatzopoulos, Danae Pla Karidi, Theodore Dalamagas. Quant. Sci. Stud. 2(4): 1447-1465, 2021 

Assessing the Predictability of Solar Energetic Particles with the use of Machine Learning techniques. Eleni Lavasa, Giorgos Giannopoulos, Athanasios Papaioannou, Anastasios Anastasiadis, IA Daglis, Angels Aran, David Pacheco, B Sanahuja. Solar Physics volume 296, Article number: 107 (2021) , 2021 

DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA–gene interactions. Karagkouni D, Paraskevopoulou MD, Chatzopoulos S, Vlachos IS, Tastsoglou S, Kanellos I, Papadimitriou D, Kavakiotis I, Maniou S, Skoufos G, Vergoulis T, Dalamagas T, Hatzigeorgiou AG. Nucleic Acids Research, gkx1141, https://doi.org/10.1093/nar/gkx1141. Epub 201 November 16, 2017 

BUFET: boosting the unbiased miRNA functional enrichment analysis using bitsets.. Konstantinos Zagganas, Thanasis Vergoulis, Maria D. Paraskevopoulou, Ioannis S. Vlachos, Spiros Skiadopoulos, Theodore Dalamagas. BMC Bioinformatics. 2017 Sep 6;18(1):399, 2017 

DIANA-mirExTra v2.0: Uncovering microRNAs and transcription factors with crucial roles in NGS expression data. Ioannis S. Vlachos, Thanasis Vergoulis, Maria D. Paraskevopoulou, Filopoimin Lykokanellos, Georgios Georgakilas, Penny Georgiou, Serafeim Chatzopoulos, Dimitra Karagkouni, Foteini Christodoulou, Theodore Dalamagas, Artemis G Hatzigeorgiou. Nucl. Acids Res. , 2016 

DIANA-miRGen v3.0: accurate characterization of microRNA promoters and their regulators. Georgios Georgakilas, Ioannis S. Vlachos, Konstantinos Zagganas, Thanasis Vergoulis, Maria D. Paraskevopoulou, Ilias Kanellos, Panayiotis Tsanakas, Dimitris Dellis, Athanasios Fevgas, Theodore Dalamagas, Artemis G. Hatzigeorgiou. Nucl. Acids Res. 44 (D1): D190-D195, 2016 

DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts. Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis Hatzigeorgiou. Nucl. Acids Res. 44 (D1): D231-D238, 2016 

DIANA-miRPath v3.0: deciphering microRNA function with experimental support. Vlachos IS, Zagganas K, Paraskevopoulou MD, Georgakilas G, Karagkouni D, Vergoulis T, Dalamagas T, Hatzigeorgiou AG. Nucleic Acids Res. 2015 Jul 1;43(W1):W460-6. doi: 10.1093/nar/gkv403. Epub 2015 May 14, 2015 

DIANA-TarBase v7.0: indexing more than half a million experimentally supported miRNA:mRNA interactions. Ioannis S. Vlachos, Maria D. Paraskevopoulou, Dimitra Karagkouni, Georgios Georgakilas, Thanasis Vergoulis, Ilias Kanellos, Ioannis-Laertis Anastasopoulos, Sofia Maniou, Konstantina Karathanou, Despina Kalfakakou, Athanasios Fevgas, Theodore Dalamaga. Nucl. Acids Res. 43 (D1): D153-D159, 2015 

mirPub: a database for searching microRNA publications. Thanasis Vergoulis, Ilias Kanellos, Nikos Kostoulas, Georgios Georgakilas, Timos Sellis, Artemis Hatzigeorgiou, Theodore Dalamagas. Bioinformatics 31 (9): 1502-1504, 2014 

DIANA-LncBase: experimentally verified and computationally predicted microRNA targets on long non-coding RNAs. Paraskevopoulou MD, Georgakilas G, Kostoulas N, Reczko M, Maragkakis M, Dalamagas T, Hatzigeorgiou AG . Nucleic Acids Research 41(Database Issue):D239-D245, 2013 

DIANA-microT web server v5.0: service integration into miRNA functional analysis workflows. Maria D. Paraskevopoulou, Georgios Georgakilas, Nikos Kostoulas, Ioannis S. Vlachos, Thanasis Vergoulis, Martin Reczko, Christos Filippidis, Theodore Dalamagas and A.G. Hatzigeorgiou. Nucl. Acids Res. 41(W1):W169-W173, 2013 

DIANA miRPath v.2.0: investigating the combinatorial effect of microRNAs in pathways. I. S. Vlachos, N. Kostoulas, T. Vergoulis, G. Georgakilas, M. Reczko, M. Maragkakis, M. D. Paraskevopoulou, K. Prionidis, T. Dalamagas, A. G. Hatzigeorgiou. Nucl. Acids Res. 40(W1): W498-W504, 2012 

Approximate Regional Sequence Matching for Genomic Databases. T. Vergoulis, T. Dalamagas, D. Sacharidis, T. Sellis. Volume 21, Issue 6, pp 779-795, 2012 

Tarbase 6.0: Capturing the Exponential Growth of miRNA Targets with Experimental Support. T. Vergoulis, I. Vlachos, P. Alexiou, G. Georgakilas, M. Maragkakis, M. Reczko, S. Gerangelos, N. Koziris, T. Dalamagas, AG Hatzigeorgiou. Nucleic Acids Research, 40 (Database Issue), 2012 

DIANA-microT Web server upgrade supports Fly and Worm miRNA target prediction and bibliographic miRNA to disease association. M. Maragkakis, T. Vergoulis, P. Alexiou, M. Reczko, K. Plomaritou, M. Gousis, K. Kourtis, N. Koziris, T. Dalamagas, A. Hatzigeorgiou. Nucleic Acids Research, 39, 2011 

miRGen 2.0 a database of microRNA genomic information and regulation. P. Alexiou, T. Vergoulis, M. Gleditzsch, G. Prekas, T. Dalamagas, M. Megraw, I. Grosse, T. Sellis, A.G. Hatzigeorgiou. Nucleic Acid Research (NAR), 38, 2010 

Accurate microRNA target prediction correlates with protein repression levels. Manolis Maragkakis, Panagiotis Alexiou, Giorgio L Papadopoulos, Martin Reczko, Theodore Dalamagas, George Giannopoulos, George Goumas, Evangelos Koukis, Kornilios Kourtis, Victor A Simossis, Praveen Sethupathy, Thanasis Vergoulis, Nectarios Koziris, . BMC Bioinformatics, 10, 2009 

DIANA-microT web server: elucidating microRNA functions through target prediction. Maragkakis M, Reczko M, Simossis VA, Alexiou P, Papadopoulos GL, Dalamagas T, Giannopoulos G, Goumas G, Koukis E, Kourtis K, Vergoulis T, Koziris N, Sellis T, Tsanakas P, Hatzigeorgiou AG. Nucleic Acids Research (NAR) volume 37, 2009 

Advanced search and data management services in Life Sciences. Thanasis Vergoulis. National Technical University of Athens, Greece, 2014 

Methods on retrieving sources and data from the Web, for supporting scientific innovation. Giorgos Giannopoulos. National Technical University of Athens, Greece, 2013 

Querying scientific databases, considering the historic evolution of data. Ilias Kanellos. Department of Computer Engineering and Informatics, National Technical University of Athens, Greece, 2012 

Advanced Web Application for Management of Biosciences Data. Γιώργος Πρέκας. Σχολή Ηλεκτρολόγων Μηχανικών και Μηχανικών Υπολογιστών, ΕΜΠ, 2010 

Approximate Sequence Matching with MapReduce. Δανάη Κούτρα. Σχολή Ηλεκτρολόγων Μηχανικών και Μηχανικών Υπολογιστών, ΕΜΠ, 2010 

Implementation of suffix tree construction using Hadoop MapReduce. Alexandros Konstantinakis - Karmis. Σχολή Ηλεκτρολόγων Μηχανικών και Μηχανικών Υπολογιστών, ΕΜΠ, 2010 

DIANA 2.0: Advanced web application for the management of bioscience data. Γεωργία Φωτοπούλου. Σχολή Ηλεκτρολόγων Μηχανικών και Μηχανικών Υπολογιστών, ΕΜΠ, 2010